All functions
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boxplot_group_interaction()
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Create a boxplot of the joint mean score for a specific ligand receptor
interaction between two groups of samples |
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celltalk()
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Assess ligand and receptor interactions across groups of cells |
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circos_plot()
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Creates a circos plot from the list of ligands and receptors |
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compare_group_interactions()
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Statistically compare interactions between groups of samples |
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filtered_lig_rec
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Expressed ligands and receptors. |
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hca_bm_umap_cell_types
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UMAP embedding and cell types from HCA BM 40k dataset |
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overall_metadata
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Metadata from 5 health blood donors and 5 healthy tonsil donors. |
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overall_umap
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UMAP of cells from 5 health blood donors and 5 healthy tonsil donors. |
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ramilowski_pairs
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List of known ligands, receptors and their iteractions. |